{"id":55333,"date":"2015-05-12T20:51:07","date_gmt":"2015-05-12T18:51:07","guid":{"rendered":"http:\/\/staging.sillon38.com\/?p=55333"},"modified":"2015-05-12T20:51:07","modified_gmt":"2015-05-12T18:51:07","slug":"le-genome-du-chene-sequence","status":"publish","type":"post","link":"https:\/\/www.sillon38.com\/blog\/2015\/05\/12\/le-genome-du-chene-sequence\/","title":{"rendered":"Le g\u00e9nome du ch\u00eane s\u00e9quenc\u00e9"},"content":{"rendered":"
\n

Des \u00e9quipes de recherche de l\u2019Inra et du CEA viennent de s\u00e9quencer le g\u00e9nome du ch\u00eane p\u00e9doncul\u00e9 (Quercus robur<\/em>). <\/strong><\/span><\/p>\n

Il s\u2019agit du premier s\u00e9quen\u00e7age pour une esp\u00e8ce du genre Quercus<\/em> tr\u00e8s largement r\u00e9pandu dans l\u2019h\u00e9misph\u00e8re nord.<\/span><\/p>\n

Ces travaux permettront notamment de mieux comprendre les m\u00e9canismes d\u2019adaptation des arbres aux variations environnementales et fourniront des \u00e9l\u00e9ments pour anticiper leurs r\u00e9ponses au changement climatique. Ils font l\u2019objet d\u2019un premier article publi\u00e9 dans la revue en libre acc\u00e8s Molecular Ecology Resources<\/em>, avant une publication finalis\u00e9e des r\u00e9sultats dans les prochains mois.<\/span><\/div>\n

<\/span><\/p>\n

\"Ch\u00eane<\/span><\/div>\n

<\/span><\/p>\n

\n
<\/div>\n

\n<\/span><\/div>\n<\/div>\n

<\/span><\/p>\n\n\n\n
Arbre embl\u00e9matique, le ch\u00eane p\u00e9doncul\u00e9 (Quercus robur<\/em>) fait partie de la section botanique la plus importante du genre Quercus<\/em> : les ch\u00eanes blancs, dont on d\u00e9nombre 200 esp\u00e8ces et qui sont pr\u00e9sents \u00e0 la fois en Europe, en Asie et en Am\u00e9rique. <\/span><\/p>\n

Gr\u00e2ce \u00e0 un consortium pilot\u00e9 par l\u2019Inra de Bordeaux-Aquitaine<\/a>, en partenariat avec le Centre National de S\u00e9quen\u00e7age du CEA (G\u00e9noscope<\/a>), le g\u00e9nome du ch\u00eane p\u00e9doncul\u00e9 vient d’\u00eatre s\u00e9quenc\u00e9. <\/span><\/p>\n

Trois ann\u00e9es de travaux ont permis de d\u00e9crypter l’ensemble de l’information g\u00e9n\u00e9tique port\u00e9e par ses 12 paires de chromosomes. Le consortium a caract\u00e9ris\u00e9 50 000 g\u00e8nes et estim\u00e9 que la moiti\u00e9 des 1,5 milliard de paires de base du g\u00e9nome \u00e9tait constitu\u00e9e d\u2019\u00e9l\u00e9ments r\u00e9p\u00e9t\u00e9s.<\/span><\/p>\n

C\u2019est la premi\u00e8re r\u00e9alisation pour une esp\u00e8ce du genre Quercus<\/em>, qui occupe une place importante au plan \u00e9conomique, \u00e9cologique, mais aussi culturel dans de nombreux pays.<\/span><\/p>\n


\n<\/span><\/td>\n

 \"<p>S\u00e9quen\u00e7age
\nS\u00e9quen\u00e7age Ch\u00eane p\u00e9doncul\u00e9 \u00a9 Inra, A. Kremer <\/span><\/span><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

Le s\u00e9quen\u00e7age du g\u00e9nome du ch\u00eane p\u00e9doncul\u00e9 constitue une porte d’entr\u00e9e unique pour analyser et comprendre la fonction des g\u00e8nes de cet arbre embl\u00e9matique. Son g\u00e9nome aura ainsi valeur de r\u00e9f\u00e9rence pour les autres esp\u00e8ces de ch\u00eanes blancs, mais \u00e9galement pour des esp\u00e8ces plus \u00e9loign\u00e9es de la famille des Fagac\u00e9es (Ch\u00e2taignier ou H\u00eatre).<\/span><\/p>\n

Il permettra d\u2019\u00e9tudier la r\u00e9gulation interne des esp\u00e8ces tr\u00e8s long\u00e9vives expos\u00e9es \u00e0 de forte variations climatiques annuelles, voire \u00e0 des \u00e9v\u00e9nements extr\u00eames au cours de leur vie. <\/span><\/p>\n

Ces recherches faciliteront \u00e9galement l\u2019identification des g\u00e8nes impliqu\u00e9s dans l’adaptation \u00e0 l’environnement ou dans les relations symbiotiques entre leurs racines et les champignons mycorhiziens (comme le myc\u00e9lium de la truffe). <\/span><\/p>\n

Elles permettront aussi l\u2019identification des g\u00e8nes responsables de la biosynth\u00e8se des extractibles du bois, tels que les tannins et whisky lactone, qui conf\u00e8rent leur saveur et leur go\u00fbt aux vins et alcools. Au plan de l\u2019\u00e9volution, la s\u00e9quence du g\u00e9nome du ch\u00eane permet d’ores et d\u00e9j\u00e0 aux chercheurs d\u2019analyser plus finement les processus d\u2019adaptation locale et de sp\u00e9ciation qui expliquent la diversit\u00e9 de ces arbres qui ont colonis\u00e9s des milieux tr\u00e8s diversifi\u00e9s.<\/span><\/p>\n

Ces travaux constituent une avanc\u00e9e majeure dans la connaissance de la biologie, de la g\u00e9n\u00e9tique et de l\u2019\u00e9volution des arbres, qui sera largement valoris\u00e9e dans les recherches \u00e0 venir portant sur la structure et le fonctionnement du g\u00e9nome de ces esp\u00e8ces p\u00e9rennes. Au-del\u00e0 de la connaissance acad\u00e9mique, ces recherches ouvrent des perspectives dans des domaines plus appliqu\u00e9s, en r\u00e9ponse aux multiples questions soci\u00e9tales portant sur l\u2019\u00e9volution des for\u00eats.<\/span><\/p>\n\n\n\n
Des r\u00e9sultats partag\u00e9s<\/strong><\/span><\/p>\n

Conform\u00e9ment aux accords internationaux des Bermudes (1998) et de Fort Lauderdale (2003), ainsi qu\u2019\u00e0 la d\u00e9claration de Toronto (2009), les donn\u00e9es du s\u00e9quen\u00e7age du g\u00e9nome du ch\u00eane sont mises librement \u00e0 disposition de la communaut\u00e9 scientifique (www.oakgenome.fr<\/a>), avant la publication de l\u2019article scientifique finalis\u00e9 par le consortium pr\u00e9vue dans les prochains mois.<\/span><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

<\/span><\/p>\n

Projet GENOAK<\/strong><\/span><\/p>\n

Ce s\u00e9quen\u00e7age, l’assemblage et l’annotation du g\u00e9nome du ch\u00eane constitue un r\u00e9sultat du projet \u00ab GENOAK \u00bb (S\u00e9quen\u00e7age du g\u00e9nome du ch\u00eane et identification de g\u00e8nes d\u2019int\u00e9r\u00eat adaptatifs chez les arbres forestiers), initi\u00e9 en octobre 2011, co-financ\u00e9 par l\u2019Agence Nationale de la Recherche<\/a> pour 4 ans et rassemblant plusieurs \u00e9quipes de recherche de l\u2019Inra<\/a> ainsi que le G\u00e9noscope<\/a> du CEA.<\/span><\/p>\n","protected":false},"excerpt":{"rendered":"

Des \u00e9quipes de recherche de l\u2019Inra et du CEA viennent de s\u00e9quencer le g\u00e9nome du ch\u00eane p\u00e9doncul\u00e9 (Quercus robur). Il s\u2019agit du premier s\u00e9quen\u00e7age pour une esp\u00e8ce du genre Quercus tr\u00e8s largement r\u00e9pandu dans l\u2019h\u00e9misph\u00e8re nord. <\/p>\n","protected":false},"author":2,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[81],"tags":[1025,2668,2959],"class_list":["post-55333","post","type-post","status-publish","format-standard","hentry","category-filierebois","tag-cea","tag-genome-du-chene","tag-inra"],"yoast_head":"\nLe g\u00e9nome du ch\u00eane s\u00e9quenc\u00e9 -<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/www.sillon38.com\/blog\/2015\/05\/12\/le-genome-du-chene-sequence\/\" \/>\n<meta property=\"og:locale\" content=\"fr_FR\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Le g\u00e9nome du ch\u00eane s\u00e9quenc\u00e9 -\" \/>\n<meta property=\"og:description\" content=\"Des \u00e9quipes de recherche de l\u2019Inra et du CEA viennent de s\u00e9quencer le g\u00e9nome du ch\u00eane p\u00e9doncul\u00e9 (Quercus robur). Il s\u2019agit du premier s\u00e9quen\u00e7age pour une esp\u00e8ce du genre Quercus tr\u00e8s largement r\u00e9pandu dans l\u2019h\u00e9misph\u00e8re nord.\" \/>\n<meta property=\"og:url\" content=\"https:\/\/www.sillon38.com\/blog\/2015\/05\/12\/le-genome-du-chene-sequence\/\" \/>\n<meta property=\"article:published_time\" content=\"2015-05-12T18:51:07+00:00\" \/>\n<meta property=\"og:image\" content=\"https:\/\/inra-dam-front-resources-cdn.brainsonic.com\/ressources\/afile\/285124-5a167-picture_client_format_2-chene-pedoncule.html\" \/>\n<meta name=\"author\" content=\"Gilbert\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<meta name=\"twitter:label1\" content=\"\u00c9crit par\" \/>\n\t<meta name=\"twitter:data1\" content=\"Gilbert\" \/>\n\t<meta name=\"twitter:label2\" content=\"Dur\u00e9e de lecture estim\u00e9e\" \/>\n\t<meta name=\"twitter:data2\" content=\"4 minutes\" \/>\n<script type=\"application\/ld+json\" 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